R. Kolodny, M. Levitt, Protein Decoy Assembly Using Short Fragments Under Geometric Constraints, Biopolymers, 68 (2003), 2780285.

Abstract:

We use libraries of commonly observed fragments to generate protein decoys. Coupled with a descriminating energy function, decoys are useful for predicting protein structure. We show that this method works well for all alpha proteins, and is promising for alpha and beta proteins.

Bibtex: 

@ARTICLE{kl-pdausfugc-03,
  AUTHOR =       "R. Kolodny and M. Levitt",
  TITLE =        "Protein Decoy Assembly Using Short Fragments Under Geometric Constraints.",
  JOURNAL =      "Biopolymers",
  YEAR =         "2003",
  volume =       "68",
  pages =        "278--285"
}