Frédéric Chazal, Leonidas J. Guibas, Steve Y. Oudot, and Primoz Skraba. Persistence-based clustering in riemannian manifolds. In Proceedings of the 27th annual ACM Symposium on Computational Geometry (SoCG '11). ACM, New York, NY, USA, 97-106, 2011.


We present a clustering scheme that combines a mode-seeking phase with a cluster merging phase in the corresponding density map. While mode detection is done by a standard graph-based hill-climbing scheme, the novelty of our approach resides in its use of topological persistence to guide the merging of clusters. Our algorithm provides additional feedback in the form of a set of points in the plane, called a persistence diagram (PD), which provably reflects the prominences of the modes of the density. In practice, this feedback enables the user to choose relevant parameter values, so that under mild sampling conditions the algorithm will output the correct number of clusters, a notion that can be made formally sound within persistence theory. The algorithm only requires rough estimates of the density at the data points, and knowledge of (approximate) pairwise distances between them. It is therefore applicable in any metric space. Meanwhile, its complexity remains practical: although the size of the input distance matrix may be up to quadratic in the number of data points, a careful implementation only uses a linear amount of memory and takes barely more time to run than to read through the input. In this conference version of the paper we emphasize the experimental aspects of our work, describing the approach, giving an intuitive overview of its theoretical guarantees, discussing the choice of its parameters in practice, and demonstrating its potential in terms of applications through a series of experimental results obtained on synthetic and real-life data sets. Precise statements and proofs of our theoretical claims can be found in the full version of the paper.


 author = {Chazal, Fr{'e}d{'e}ric and Guibas, Leonidas J. and Oudot, Steve Y. and Skraba, Primoz},
 title = {Persistence-based Clustering in Riemannian Manifolds},
 booktitle = {Proceedings of the 27th Annual ACM Symposium on Computational Geometry},
 series = {SoCG '11},
 year = {2011},
 location = {Paris, France},
 pages = {97--106}