@phdthesis{guc-suthesis,
author = {Chen Gu},
title = {Geometric Algorithms in Modeling Biological Evolution},
school = {Stanford University},
year = {2013},
}

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@inproceedings{ggk-ttsercm-14,
author = {Chen Gu and Leonidas Guibas and Michael Kerber},
title = {Topology-Driven Trajectory Synthesis with an Example on Retinal Cell Motions},
booktitle = {Proceedings of the 14th Workshop on Algorithms in Bioinformatics},
pages = {326--339},
year = {2014},
}

@article{gcmpcg-bmsmsd-13,
author = {Chen Gu and Huang-Wei Chang and Lutz Maibaum and Vijay S. Pande and Gunnar E. Carlsson and Leonidas J. Guibas},
title = {Building Markov state models with solvent dynamics},
journal = {BMC Bioinformatics},
volume = {14},
number = {Suppl 2},
pages = {S8},
year = {2013},
url = {http://www.biomedcentral.com/1471-2105/14/S2/S8},
doi = {10.1186/1471-2105-14-S2-S8},
issn = {1471-2105},
}

@inproceedings{gjg-kcdmd-11,
author = {Chen Gu and Xiaoye Jiang and Leonidas Guibas},
title = {Kinetically-aware Conformational Distances in Molecular Dynamics},
booktitle = {Proceedings of the 23rd Canadian Conference on Computational Geometry},
pages = {217--222},
year = {2011},
} 

@inproceedings{gg-dbfo-11,
author = {Chen Gu and Leonidas Guibas},
title = {Distance between Folded Objects},
booktitle = {Proceedings of the 27th European Workshop on Computational Geometry},
pages = {39--42},
year = {2011},
}